miRBase entry: bmo-mir-3271

Stem-loop bmo-mir-3271


Accession
MI0014327
Description
Bombyx mori bmo-mir-3271 precursor miRNA


Sequence

9 reads, 5 reads per million, 2 experiments
gcgguggauucguggauuuucguguggcaaacagaacagugcgUGACAUCAUGUGCGCGUGCUGCUgaguaacaauagcagcagcaccccacguguuuucacgcucguagucugugaagcaacaaggcagcagugcagugcg
(((.((.(((..((.....((.(((.((..(((((...(.((((((...((((((.(.(((((((((...........))))))))).)))))))...)))))).)....)))))...)).))).))))..))).)).))).

Structure
-   g  g   cg  gauuu  g   g  -aa     -aca u      CAU      C C         agua 
 gcg ug auu  ug     uc ugu gc   acaga    g gcgUGA   CAUGUG G GUGCUGCUg    a
 ||| || |||  ||     || ||| ||   |||||    | ||||||   |||||| | |||||||||    c
 cgu ac uga  ac     gg aca cg   ugucu    c cgcacu   gugcac c cacgacgac    a
g   g  g   cg  -----  a   a  aag     gaug u      uuu      - c         gaua 


Annotation confidence Not enough data
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Genome context
NW_004582033.1: 358062-358203 [+]

Database links

Mature bmo-miR-3271

Accession MIMAT0015456
Description Bombyx mori bmo-miR-3271 mature miRNA
Sequence 44 - UGACAUCAUGUGCGCGUGCUGCU - 66
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415