miRBase entry: bmo-mir-3268

Stem-loop bmo-mir-3268


Accession
MI0014324
Description
Bombyx mori bmo-mir-3268 precursor miRNA


Sequence

10 reads, 5 reads per million, 3 experiments
aaugaacaggugaauUGAAGUAUGAUUCAUUAGUAGACUAuacucguaauuauucuaauagugaugggaauuGUGUUUGUCGAUGAAUUAUUGGUACUCAaaaaaccuucga
.......((((...((((.((((((((((((..(((((.((((((((.(((((....))))).)))))...))))))))..))))))))....))))))))...))))....

Structure
aaugaac    gaa    A    ----        AG     U   ---     a     u 
       aggu   uUGA GUAU    GAUUCAUU  UAGAC Aua   cucgu auuau c
       ||||   |||| ||||    ||||||||  ||||| |||   ||||| |||||  
       ucca   aACU CAUG    UUAAGUAG  GUUUG UGu   gggua ugaua u
---agcu    aaa    -    GUUA        CU     -   uaa     g     a 


Annotation confidence Not enough data
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Genome context
NW_004581739.1: 197333-197444 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3268
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3268-5p

Accession MIMAT0015452
Description Bombyx mori bmo-miR-3268-5p mature miRNA
Sequence 16 - UGAAGUAUGAUUCAUUAGUAGACUA - 40
Evidence experimental
SOLID [1]

Mature bmo-miR-3268-3p

Accession MIMAT0015453
Description Bombyx mori bmo-miR-3268-3p mature miRNA
Sequence 73 - GUGUUUGUCGAUGAAUUAUUGGUACUCA - 100
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415