miRBase entry: hsa-mir-3200

Stem-loop hsa-mir-3200


Accession
MI0014249
Symbol
HGNC: MIR3200
Description
Homo sapiens hsa-mir-3200 precursor miRNA
Gene family
MIPF0001441; mir-3200

Literature search
3 open access papers mention hsa-mir-3200
(12 sentences)

Sequence

2739 reads, 69 reads per million, 104 experiments
gguggucgagggAAUCUGAGAAGGCGCACAAGGUuuguguccaauacaguccaCACCUUGCGCUACUCAGGUCUGcucgugcccu
((.(((((((.(.(((((((..((((((..((((((((((...)))))).....)))))))))).))))))).).)))).)))))

Structure
  u   -    g A       AA      CA    -----      c 
gg ggu cgag g AUCUGAG  GGCGCA  AGGU     uugugu  
|| ||| |||| | |||||||  ||||||  ||||     |||||| c
uc ccg gcuc U UGGACUC  UCGCGU  UCCA     gacaua  
  -   u    G C       -A      --    Caccu      a 


Annotation confidence High
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Genome context
chr22: 30731557-30731641 [+]

Disease association
hsa-mir-3200 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-3200-5p

Accession MIMAT0017392
Description Homo sapiens hsa-miR-3200-5p mature miRNA
Sequence 13 - AAUCUGAGAAGGCGCACAAGGU - 34
Evidence experimental
Illumina [2-3,5], Northern [4]
Database links
Predicted targets

Mature hsa-miR-3200-3p

Accession MIMAT0015085
Description Homo sapiens hsa-miR-3200-3p mature miRNA
Sequence 54 - CACCUUGCGCUACUCAGGUCUG - 75
Evidence experimental
Illumina [1-3,5], Northern [4]
Database links
Predicted targets

References

  1. PubMed ID: 20300190
    Characterization of the Melanoma miRNAome by Deep Sequencing
    "Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
    "PLoS One (2010) 5:e9685

  2. PubMed ID: 20224791
    Discovery of novel microRNAs in female reproductive tract using next generation sequencing
    Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH
    PLoS One (2010) 5:e9637

  3. PubMed ID: 20532037
    Re-inspection of small RNA sequence datasets reveals several novel human miRNA genes
    Hansen TB, Bramsen JB, Kjems J
    PLoS One (2010) 5:e10961

  4. PubMed ID: 20459774
    Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
    Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
    BMC Biol (2010) 8:58

  5. PubMed ID: 21199797
    Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene
    "Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C"
    "Cancer Res (2011) 71:78-86