Stem-loop sequence hsa-mir-3180-1

Accession

MI0014214 (change log)

Symbol

HGNC:MIR3180-1

Description

Homo sapiens miR-3180-1 stem-loop

Gene family

MIPF0000894; mir-3180

Literature search

7 open access papers mention hsa-mir-3180-1
(59 sentences)

Stem-loop

   cagu   ac      a      a  c              ----------  c 
5'     gcg  gggcgg gcuucc ga gcuccgccccacgu          cg a
       |||  |||||| |||||| || ||||||||||||||          ||  
3'     cgu  cccgcc cggagg cu cgaggcggggugcg          gc u
   --gu   --      c      c  u              aaagggcccc  g 

Deep sequencing

5074 reads, 13.8 reads per million, 87 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 14911220-14911313 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-3180-1

• hsa-mir-3179-1: chr16: 14901508-14901591 [+]
• hsa-mir-3670-1: chr16: 14907717-14907781 [+]
• hsa-mir-3180-1: chr16: 14911220-14911313 [+]

Database links

• EntrezGene:MIR3180-1
• HGNC:MIR3180-1
• RNAcentral:URS000075D20A_9606
• miRBase Tracker:MI0014214

Mature sequence hsa-miR-3180-5p

• Accession: MIMAT0015057
• Sequence: 18 - cuuccagacgcuccgccccacgucg - 42
• Deep sequencing: 1167 reads, 46 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004EE409_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3180-5p
  • TargetScanVert:hsa-miR-3180-5p
  • miRDB:hsa-miR-3180-5p
  • microrna.org:hsa-miR-3180-5p

Mature sequence hsa-miR-3180-3p

• Accession: MIMAT0015058
• Sequence: 62 - uggggcggagcuuccggaggcc - 83
• Deep sequencing: 14034 reads, 62 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002C4233_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3180-3p
  • TargetScanVert:hsa-miR-3180-3p
  • miRDB:hsa-miR-3180-3p
  • microrna.org:hsa-miR-3180-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
3. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).