Stem-loop sequence hsa-mir-3178

Accession

MI0014212 (change log)

Symbol

HGNC:MIR3178

Description

Homo sapiens miR-3178 stem-loop

Literature search

4 open access papers mention hsa-mir-3178
(5 sentences)

Stem-loop

         -------     -        ----   -g        a a 
5' gaggcu       gggcg gggcgcgg    ccg  aucggucg g g
   ||||||       ||||| ||||||||    |||  |||||||| | c
3' cucuga       cccgc cccgugcc    ggc  uagucggu c g
         cgcaaac     a        cucu   ag        c u 

Deep sequencing

2344 reads, 37.7 reads per million, 122 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 2531922-2532005 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000435636 ; TBC1D24-001; intron 1

  OTTHUMT00000435637 ; TBC1D24-002; intron 1

  ENST00000567020 ; TBC1D24-001; intron 1

  ENST00000293970 ; TBC1D24-002; intron 1

Database links

• EntrezGene:MIR3178
• HGNC:MIR3178
• RNAcentral:URS000075B49B_9606
• miRBase Tracker:MI0014212

Mature sequence hsa-miR-3178

• Accession: MIMAT0015055
• Sequence: 11 - ggggcgcggccggaucg - 27
• Deep sequencing: 2310 reads, 115 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000365675_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3178
  • TargetScanVert:hsa-miR-3178
  • miRDB:hsa-miR-3178
  • microrna.org:hsa-miR-3178

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).