Stem-loop sequence hsa-mir-3176

Accession

MI0014210 (change log)

Symbol

HGNC:MIR3176

Description

Homo sapiens miR-3176 stem-loop

Literature search

1 open access papers mention hsa-mir-3176
(1 sentences)

Stem-loop

   u    ucuccagucu  a        c  c         cac    -     
5'  ggcc          gc gcucccgg ag cucgggcca   uccc ggga 
    ||||          || |||||||| || |||||||||   |||| ||| u
3'  ccgg          cg ugggggcc uc ggguccggu   aggg cccc 
   g    ----------  g        a  a         --c    a     

Deep sequencing

1981 reads, 51.4 reads per million, 74 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 543277-543366 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000139677 ; RAB11FIP3-003; intron 2

  OTTHUMT00000139676 ; RAB11FIP3-002; intron 3

  OTTHUMT00000313691 ; RAB11FIP3-009; intron 3

  OTTHUMT00000139678 ; RAB11FIP3-004; intron 3

  OTTHUMT00000109066 ; RAB11FIP3-001; intron 5

  OTTHUMT00000317787 ; RAB11FIP3-010; intron 6

  ENST00000495663 ; RAB11FIP3-003; intron 2

  ENST00000452814 ; RAB11FIP3-002; intron 3

  ENST00000449879 ; RAB11FIP3-009; intron 3

  ENST00000412256 ; RAB11FIP3-004; intron 3

  ENST00000450428 ; RAB11FIP3-201; intron 3

  ENST00000262305 ; RAB11FIP3-001; intron 5

  ENST00000434585 ; RAB11FIP3-010; intron 6

  ENST00000457159 ; RAB11FIP3-202; intron 6

Clustered miRNAs

< 10kb from hsa-mir-3176

• hsa-mir-5587: chr16: 535316-535368 [+]
• hsa-mir-3176: chr16: 543277-543366 [+]

Database links

• EntrezGene:MIR3176
• HGNC:MIR3176
• RNAcentral:URS000075C750_9606
• miRBase Tracker:MI0014210

Mature sequence hsa-miR-3176

• Accession: MIMAT0015053
• Sequence: 60 - acuggccugggacuaccgg - 78
• Deep sequencing: 1957 reads, 72 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS00004AAAFF_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3176
  • TargetScanVert:hsa-miR-3176
  • miRDB:hsa-miR-3176
  • microrna.org:hsa-miR-3176

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).