Stem-loop sequence hsa-mir-3163

Accession

MI0014193 (change log)

Symbol

HGNC:MIR3163

Description

Homo sapiens miR-3163 stem-loop

Literature search

2 open access papers mention hsa-mir-3163
(6 sentences)

Stem-loop

   u                 a   c        cuuc 
5'  uccucaucuauaaaaug ggg aguaagac    c
    ||||||||||||||||| ||| ||||||||    u
3'  aggaguagauauuuuac ccc ucauucug    u
   a                 c   a        uucc 

Deep sequencing

111 reads, 4.35 reads per million, 46 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr11: 66934434-66934506 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000393139 ; KDM2A-001; intron 2

  OTTHUMT00000393140 ; KDM2A-002; intron 2

  OTTHUMT00000393142 ; KDM2A-012; intron 2

  ENST00000398645 ; KDM2A-001; intron 2

  ENST00000529006 ; KDM2A-002; intron 2

  ENST00000527157 ; KDM2A-012; intron 2

Database links

• EntrezGene:MIR3163
• HGNC:MIR3163
• RNAcentral:URS000075A0BF_9606
• miRBase Tracker:MI0014193

Mature sequence hsa-miR-3163

• Accession: MIMAT0015037
• Sequence: 10 - uauaaaaugagggcaguaagac - 31
• Deep sequencing: 79 reads, 35 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003A5E54_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3163
  • TargetScanVert:hsa-miR-3163
  • miRDB:hsa-miR-3163
  • microrna.org:hsa-miR-3163

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).