Stem-loop sequence mmu-mir-3102

Accession

MI0014099 (change log)

Symbol

MGI:Mir3102

Description

Mus musculus miR-3102 stem-loop

Gene family

MIPF0001469; mir-3102

Literature search

8 open access papers mention mmu-mir-3102
(9 sentences)

Stem-loop

   --   a       ---     ggg    g   u     c  g      auugau 
5'   gug guggcca   gggug   cugg ugg gcagg ag agagcc      c
     ||| |||||||   |||||   |||| ||| ||||| || ||||||       
3'   cac caucggu   cccac   gacc acc cgucc uc ucucgg      u
   ga   c       uac     -ga    g   c     c  a      guguua 

Deep sequencing

5840 reads, 17.4 reads per million, 92 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 100882306-100882409 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000107032 ; Arhgef17-201; intron 8

Database links

• EntrezGene:Mir3102
• MGI:Mir3102
• miRBase Tracker:MI0014099

Mature sequence mmu-miR-3102-5p

• Accession: MIMAT0014933
• Previous IDs: mmu-miR-3102*
• Sequence: 1 - gugaguggccaggguggggcug - 22
• Deep sequencing: 50 reads, 24 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-3102-5p
  • miRDB:mmu-miR-3102-5p

Mature sequence mmu-miR-3102-5p.2-5p

• Accession: MIMAT0014934
• Previous IDs: mmu-miR-3102-5p.2
• Sequence: 23 - gguggugcaggcaggagagcc - 43
• Deep sequencing: 1437 reads, 67 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000613562_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3102-5p.2-5p
  • miRDB:mmu-miR-3102-5p.2-5p

Mature sequence mmu-miR-3102-3p.2-3p

• Accession: MIMAT0014935
• Previous IDs: mmu-miR-3102-3p.2
• Sequence: 60 - cucuacucccugccccagcca - 80
• Deep sequencing: 836 reads, 45 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000C4EA7_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3102-3p.2-3p
  • miRDB:mmu-miR-3102-3p.2-3p

Mature sequence mmu-miR-3102-3p

• Accession: MIMAT0014936
• Previous IDs: mmu-miR-3102
• Sequence: 81 - gagcaccccauuggcuacccaca - 103
• Deep sequencing: 3470 reads, 84 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000282A3B_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3102-3p
  • miRDB:mmu-miR-3102-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).