Stem-loop sequence mmu-mir-3087

Accession

MI0014080 (change log)

Symbol

MGI:Mir3087

Description

Mus musculus miR-3087 stem-loop

Literature search

1 open access papers mention mmu-mir-3087
(1 sentences)

Stem-loop

   -ac      g    -a     --   a u 
5'    agggca ggca  gaguu  gag c u
      |||||| ||||  |||||  ||| |  
3'    uccugu cugu  cucaa  cuc g a
   gac      a    ca     uc   g u 

Deep sequencing

397 reads, 0 reads per million, 53 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 25442779-25442834 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000028851 ; Abca2-002; intron 5

  OTTMUST00000028850 ; Abca2-001; intron 28

  ENSMUST00000150550 ; Abca2-002; intron 5

  ENSMUST00000102919 ; Abca2-001; intron 28

Database links

• EntrezGene:Mir3087
• MGI:Mir3087
• RNAcentral:URS000075BFC7_10090
• miRBase Tracker:MI0014080

Mature sequence mmu-miR-3087-5p

• Accession: MIMAT0014895
• Previous IDs: mmu-miR-3087*
• Sequence: 2 - cagggcagggcaagaguugag - 22
• Deep sequencing: 293 reads, 37 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000000730F_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3087-5p
  • miRDB:mmu-miR-3087-5p

Mature sequence mmu-miR-3087-3p

• Accession: MIMAT0014896
• Previous IDs: mmu-miR-3087
• Sequence: 35 - uaacucacugucauguccuca - 55
• Deep sequencing: 104 reads, 35 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000483E6D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3087-3p
  • miRDB:mmu-miR-3087-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).