Stem-loop sequence mmu-mir-466p

Accession

MI0014078 (change log)

Symbol

MGI:Mir466p

Description

Mus musculus miR-466p stem-loop

Gene family

MIPF0000208; mir-466

Literature search

22 open access papers mention mmu-mir-466p
(57 sentences)

Stem-loop

   u    --          -          ac     ca     g au 
5'  gugu  auauguguuu augugugugu  augua  ugugu a  a
    ||||  |||||||||| ||||||||||  |||||  ||||| |   
3'  cacg  uauacacaga uacacacgca  uacau  auaua u  u
   a    ag          a          ca     --     g ag 

Deep sequencing

26666 reads, 117 reads per million, 105 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10506006-10506094 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-466p

• mmu-mir-466b-7: chr2: 10496268-10496355 [+]
• mmu-mir-669p-2: chr2: 10496497-10496583 [+]
• mmu-mir-467a-9: chr2: 10498393-10498475 [+]
• mmu-mir-466b-2: chr2: 10498685-10498766 [+]
• mmu-mir-669a-10: chr2: 10498911-10498997 [+]
• mmu-mir-669a-11: chr2: 10501339-10501425 [+]
• mmu-mir-467a-10: chr2: 10503273-10503355 [+]
• mmu-mir-466b-3: chr2: 10503565-10503645 [+]
• mmu-mir-669a-12: chr2: 10503791-10503877 [+]
• mmu-mir-467e: chr2: 10505721-10505807 [+]
• mmu-mir-466p: chr2: 10506006-10506094 [+]
• mmu-mir-467d: chr2: 10507630-10507714 [+]
• mmu-mir-466a: chr2: 10507918-10507990 [+]
• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]
• mmu-mir-297a-3: chr2: 10515820-10515921 [+]

Database links

• EntrezGene:Mir466p
• MGI:Mir466p
• RNAcentral:URS000075B2FB_10090
• miRBase Tracker:MI0014078

Mature sequence mmu-miR-466p-5p

• Accession: MIMAT0014891
• Sequence: 15 - uauguguguguacauguacau - 35
• Deep sequencing: 4278 reads, 85 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000044BFF6_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-466p-5p
  • miRDB:mmu-miR-466p-5p

Mature sequence mmu-miR-466p-3p

• Accession: MIMAT0014892
• Sequence: 54 - auacauacacgcacacauaaga - 75
• Deep sequencing: 22372 reads, 102 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000004859F_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-466p-3p
  • miRDB:mmu-miR-466p-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).