Stem-loop sequence mmu-mir-466b-7

Accession

MI0014070 (change log)

Symbol

MGI:Mir466b-7

Description

Mus musculus miR-466b-7 stem-loop

Gene family

MIPF0000208; mir-466

Literature search

27 open access papers mention mmu-mir-466b-7
(88 sentences)

Stem-loop

   u    ----       -g          ac     c       aa 
5'  gugu    auguguu  augugugugu  augua augugug  u
    ||||    |||||||  ||||||||||  ||||| |||||||  a
3'  cacg    uacacag  uacacacgca  uacau uacauau  u
   a    agua       aa          ca     a       ag 

Deep sequencing

31382 reads, 125 reads per million, 102 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10496268-10496355 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-466b-7

• mmu-mir-466b-4: chr2: 10486423-10486512 [+]
• mmu-mir-669a-7: chr2: 10486653-10486739 [+]
• mmu-mir-467a-5: chr2: 10488599-10488681 [+]
• mmu-mir-466b-5: chr2: 10488887-10488974 [+]
• mmu-mir-669p-1: chr2: 10489116-10489202 [+]
• mmu-mir-467a-6: chr2: 10491048-10491130 [+]
• mmu-mir-466c-3: chr2: 10491336-10491425 [+]
• mmu-mir-669a-8: chr2: 10491566-10491652 [+]
• mmu-mir-467a-7: chr2: 10493510-10493592 [+]
• mmu-mir-466b-6: chr2: 10493798-10493887 [+]
• mmu-mir-669a-9: chr2: 10494028-10494114 [+]
• mmu-mir-467a-8: chr2: 10495980-10496062 [+]
• mmu-mir-466b-7: chr2: 10496268-10496355 [+]
• mmu-mir-669p-2: chr2: 10496497-10496583 [+]
• mmu-mir-467a-9: chr2: 10498393-10498475 [+]
• mmu-mir-466b-2: chr2: 10498685-10498766 [+]
• mmu-mir-669a-10: chr2: 10498911-10498997 [+]
• mmu-mir-669a-11: chr2: 10501339-10501425 [+]
• mmu-mir-467a-10: chr2: 10503273-10503355 [+]
• mmu-mir-466b-3: chr2: 10503565-10503645 [+]
• mmu-mir-669a-12: chr2: 10503791-10503877 [+]
• mmu-mir-467e: chr2: 10505721-10505807 [+]
• mmu-mir-466p: chr2: 10506006-10506094 [+]

Database links

• EntrezGene:Mir466b-7
• MGI:Mir466b-7
• RNAcentral:URS00007A1AC8_10090
• miRBase Tracker:MI0014070

Mature sequence mmu-miR-466b-5p

• Accession: MIMAT0004875
• Sequence: 12 - ugauguguguguacauguacau - 33
• Deep sequencing: 63426 reads, 97 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000723A4_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-466b-5p
  • miRDB:mmu-miR-466b-5p
  • microrna.org:mmu-miR-466b-5p

Mature sequence mmu-miR-466b-3p

• Accession: MIMAT0004876
• Sequence: 53 - auacauacacgcacacauaaga - 74
• Deep sequencing: 183579 reads, 102 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000004859F_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-466b-3p
  • miRDB:mmu-miR-466b-3p
  • microrna.org:mmu-miR-466b-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).