Stem-loop sequence mmu-mir-467a-5

Accession

MI0014062 (change log)

Symbol

MGI:Mir467a-5

Description

Mus musculus miR-467a-5 stem-loop

Gene family

MIPF0000316; mir-467

Literature search

26 open access papers mention mmu-mir-467a-5
(105 sentences)

Stem-loop

   u    c      c   a   cc  c             ua 
5'  gugc ugugug gua gug  ug auguauaugcgug  u
    |||| |||||| ||| |||  || |||||||||||||  a
3'  cacg acacac cau cac  ac uacauauacguau  u
   a    u      a   c   ac  a             uu 

Deep sequencing

95781 reads, 392 reads per million, 112 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10488599-10488681 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-467a-5

• mmu-mir-467a-2: chr2: 10478798-10478880 [+]
• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]
• mmu-mir-466c-2: chr2: 10483966-10484055 [+]
• mmu-mir-669a-6: chr2: 10484196-10484282 [+]
• mmu-mir-467a-4: chr2: 10486135-10486217 [+]
• mmu-mir-466b-4: chr2: 10486423-10486512 [+]
• mmu-mir-669a-7: chr2: 10486653-10486739 [+]
• mmu-mir-467a-5: chr2: 10488599-10488681 [+]
• mmu-mir-466b-5: chr2: 10488887-10488974 [+]
• mmu-mir-669p-1: chr2: 10489116-10489202 [+]
• mmu-mir-467a-6: chr2: 10491048-10491130 [+]
• mmu-mir-466c-3: chr2: 10491336-10491425 [+]
• mmu-mir-669a-8: chr2: 10491566-10491652 [+]
• mmu-mir-467a-7: chr2: 10493510-10493592 [+]
• mmu-mir-466b-6: chr2: 10493798-10493887 [+]
• mmu-mir-669a-9: chr2: 10494028-10494114 [+]
• mmu-mir-467a-8: chr2: 10495980-10496062 [+]
• mmu-mir-466b-7: chr2: 10496268-10496355 [+]
• mmu-mir-669p-2: chr2: 10496497-10496583 [+]
• mmu-mir-467a-9: chr2: 10498393-10498475 [+]

Database links

• EntrezGene:Mir467a-5
• MGI:Mir467a-5
• RNAcentral:URS000075EE70_10090
• miRBase Tracker:MI0014062

Mature sequence mmu-miR-467a-5p

• Accession: MIMAT0003409
• Previous IDs: mmu-miR-467*;mmu-miR-467a
• Sequence: 15 - uaagugccugcauguauaugcg - 36
• Deep sequencing: 801150 reads, 101 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004D11A8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-467a-5p
  • miRDB:mmu-miR-467a-5p
  • microrna.org:mmu-miR-467a-5p

Mature sequence mmu-miR-467a-3p

• Accession: MIMAT0002108
• Previous IDs: mmu-miR-467;mmu-miR-467a;mmu-miR-467a*;mmu-miR-467a-1*;mmu-miR-467a*
• Sequence: 50 - cauauacauacacacaccuaca - 71
• Deep sequencing: 156500 reads, 99 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002AE7F1_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-467a-3p
  • miRDB:mmu-miR-467a-3p
  • microrna.org:mmu-miR-467a-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).