Stem-loop sequence mmu-mir-3072

Accession

MI0014035 (change log)

Symbol

MGI:Mir3072

Description

Mus musculus miR-3072 stem-loop

Gene family

MIPF0001410; mir-3072

Literature search

4 open access papers mention mmu-mir-3072
(18 sentences)

Stem-loop

         uu     c     -ac  c ag  a       cu     
5' gggcug  gagug gaggg   cc g  gg gggcagg  gccc 
   ||||||  ||||| |||||   || |  || |||||||  ||| c
3' cccgac  cucgu cuucc   gg c  cc cccgucc  cgga 
         --     u     gaa  a cu  -       --     

Deep sequencing

1675 reads, 30 reads per million, 60 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109747878-109747960 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000113371 ; Mirg-007; intron 1

  OTTMUST00000113372 ; Mirg-003; exon 1

  OTTMUST00000113367 ; Mirg-001; intron 6

  OTTMUST00000113368 ; Mirg-005; intron 6

  OTTMUST00000114051 ; Mirg-010; intron 10

  OTTMUST00000114052 ; Mirg-009; intron 13

  OTTMUST00000114049 ; Mirg-011; intron 15

  ENSMUST00000183068 ; Mirg-007; intron 1

  ENSMUST00000183084 ; Mirg-003; exon 1

  ENSMUST00000181543 ; Mirg-001; intron 6

  ENSMUST00000183116 ; Mirg-005; intron 6

  ENSMUST00000182185 ; Mirg-010; intron 10

  ENSMUST00000182499 ; Mirg-009; intron 13

  ENSMUST00000183144 ; Mirg-011; intron 15

Clustered miRNAs

< 10kb from mmu-mir-3072

• mmu-mir-154: chr12: 109738433-109738498 [+]
• mmu-mir-496a: chr12: 109739119-109739197 [+]
• mmu-mir-377: chr12: 109740510-109740577 [+]
• mmu-mir-541: chr12: 109742409-109742498 [+]
• mmu-mir-409: chr12: 109743158-109743236 [+]
• mmu-mir-412: chr12: 109743289-109743368 [+]
• mmu-mir-369: chr12: 109743418-109743496 [+]
• mmu-mir-410: chr12: 109743715-109743795 [+]
• mmu-mir-3072: chr12: 109747878-109747960 [+]

Database links

• EntrezGene:Mir3072
• MGI:Mir3072
• RNAcentral:URS0000759A34_10090
• miRBase Tracker:MI0014035

Mature sequence mmu-miR-3072-5p

• Accession: MIMAT0014852
• Previous IDs: mmu-miR-3072*
• Sequence: 16 - agggaccccgagggagggcagg - 37
• Deep sequencing: 555 reads, 44 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS00002B7EB0_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3072-5p
  • miRDB:mmu-miR-3072-5p
  • microrna.org:mmu-miR-3072-5p

Mature sequence mmu-miR-3072-3p

• Accession: MIMAT0014853
• Previous IDs: mmu-miR-3072
• Sequence: 51 - ugcccccuccaggaagccuucu - 72
• Deep sequencing: 1113 reads, 51 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS000033CE41_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3072-3p
  • miRDB:mmu-miR-3072-3p
  • microrna.org:mmu-miR-3072-3p

References

1. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).