Stem-loop sequence mmu-mir-3071

Accession

MI0014034 (change log)

Symbol

MGI:Mir3071

Description

Mus musculus miR-3071 stem-loop

Literature search

3 open access papers mention mmu-mir-3071
(3 sentences)

Stem-loop

     a     u  a     -     agac         gcu 
5' ga cccuc ga gacuc auuug    gaugaugga   u
   || ||||| || ||||| |||||    |||||||||   a
3' cu gggag cu cugag uaaac    cuacuaccu   a
     c     c  c     g     aaaa         aag 

Deep sequencing

97 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109595318-109595397 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000149046 ; Rtl1-201; exon 2

  antisense

  ENSMUST00000093621 ; Mir136-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-3071

• mmu-mir-136: chr12: 109595327-109595388 [+]
• mmu-mir-3071: chr12: 109595318-109595397 [-]
• mmu-mir-432: chr12: 109594956-109595030 [+]
• mmu-mir-434: chr12: 109594506-109594599 [+]
• mmu-mir-127: chr12: 109592846-109592915 [+]
• mmu-mir-433: chr12: 109591715-109591838 [+]
• mmu-mir-431: chr12: 109590447-109590537 [+]
• mmu-mir-3070-2: chr12: 109588592-109588680 [+]
• mmu-mir-3070-1: chr12: 109587943-109588031 [+]
• mmu-mir-665: chr12: 109586314-109586407 [+]
• mmu-mir-540: chr12: 109586080-109586146 [+]
• mmu-mir-3544: chr12: 109585813-109585873 [-]
• mmu-mir-337: chr12: 109585789-109585885 [+]

Database links

• EntrezGene:Mir3071
• MGI:Mir3071
• RNAcentral:URS000075E785_10090
• miRBase Tracker:MI0014034

Mature sequence mmu-miR-3071-5p

• Accession: MIMAT0014850
• Previous IDs: mmu-miR-3071
• Sequence: 14 - acucauuugagacgaugaugga - 35
• Deep sequencing: 86 reads, 10 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000002967_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3071-5p
  • miRDB:mmu-miR-3071-5p

Mature sequence mmu-miR-3071-3p

• Accession: MIMAT0014851
• Previous IDs: mmu-miR-3071*
• Sequence: 48 - aucaucaaaacaaauggagucc - 69
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-3071-3p
  • miRDB:mmu-miR-3071-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).