Stem-loop sequence mmu-mir-3068

Accession

MI0014030 (change log)

Symbol

MGI:Mir3068

Description

Mus musculus miR-3068 stem-loop

Gene family

MIPF0001596; mir-3068

Literature search

3 open access papers mention mmu-mir-3068
(10 sentences)

Stem-loop

     g     aa       uca     g   uaa      uac 
5' gc agagu  uuggagu   ugcaa uuc   ccagcu   u
   || |||||  |||||||   ||||| |||   ||||||    
3' cg ucuua  aaccuca   acguu aag   ggucga   c
     -     -c       -ug     -   -ug      uga 

Deep sequencing

34174 reads, 39.6 reads per million, 106 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 87437679-87437757 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000083755 ; Alkbh1-007; intron 1

  OTTMUST00000083721 ; Alkbh1-005; intron 2

  OTTMUST00000083757 ; Alkbh1-009; intron 2

  OTTMUST00000083717 ; Alkbh1-001; intron 3

  OTTMUST00000083720 ; Alkbh1-004; intron 3

  OTTMUST00000083756 ; Alkbh1-008; intron 3

  OTTMUST00000083722 ; Alkbh1-006; intron 3

  OTTMUST00000083719 ; Alkbh1-003; intron 4

  OTTMUST00000083718 ; Alkbh1-002; intron 5

  ENSMUST00000160687 ; Alkbh1-007; intron 1

  ENSMUST00000083004 ; Mir3068-201; exon 1

  ENSMUST00000159079 ; Alkbh1-005; intron 2

  ENSMUST00000162986 ; Alkbh1-009; intron 2

  ENSMUST00000162961 ; Alkbh1-001; intron 3

  ENSMUST00000162247 ; Alkbh1-004; intron 3

  ENSMUST00000160919 ; Alkbh1-008; intron 3

  ENSMUST00000160850 ; Alkbh1-006; intron 3

  ENSMUST00000160113 ; Alkbh1-003; intron 4

  ENSMUST00000161712 ; Alkbh1-002; intron 5

Database links

• EntrezGene:Mir3068
• MGI:Mir3068
• RNAcentral:URS000075AB60_10090
• miRBase Tracker:MI0014030

Mature sequence mmu-miR-3068-5p

• Accession: MIMAT0014842
• Previous IDs: mmu-miR-3068
• Sequence: 11 - uuggaguucaugcaaguucuaacc - 34
• Deep sequencing: 26941 reads, 101 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS00003CD8B0_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3068-5p
  • miRDB:mmu-miR-3068-5p

Mature sequence mmu-miR-3068-3p

• Accession: MIMAT0014843
• Previous IDs: mmu-miR-3068*
• Sequence: 52 - ggugaauugcaguacuccaaca - 73
• Deep sequencing: 7224 reads, 104 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS000057B035_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3068-3p
  • miRDB:mmu-miR-3068-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).
2. PMID:20935160 "Next-generation sequencing identifies the natural killer cell microRNA transcriptome" Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER Genome Res. 20:1590-1604(2010).