Stem-loop sequence mmu-mir-3064

Accession

MI0014026 (change log)

Symbol

MGI:Mir3064

Description

Mus musculus miR-3064 stem-loop

Gene family

MIPF0001238; mir-3064

Literature search

5 open access papers mention mmu-mir-3064
(9 sentences)

Stem-loop

   --g  cu  c     ug     -     cuc  u 
5'    gu  gg uguug  gugug caaaa   cg a
      ||  || |||||  ||||| |||||   || c
3'    ca  cc acaac  cacac guuuu   gu a
   aga  uu  -     gu     c     auc  u 

Deep sequencing

1329 reads, 0 reads per million, 81 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 106782693-106782759 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000007737 ; Ddx5-007; intron 2

  OTTMUST00000007732 ; Ddx5-002; 3'UTR (exon 11)

  ENSMUST00000127481 ; Ddx5-007; intron 2

  ENSMUST00000133426 ; Ddx5-002; 3'UTR (exon 11)

Database links

• EntrezGene:Mir3064
• MGI:Mir3064
• RNAcentral:URS000075E6F6_10090
• miRBase Tracker:MI0014026

Mature sequence mmu-miR-3064-5p

• Accession: MIMAT0014834
• Sequence: 3 - ucuggcuguuguggugugcaaa - 24
• Deep sequencing: 1257 reads, 80 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000031250B_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3064-5p
  • miRDB:mmu-miR-3064-5p

Mature sequence mmu-miR-3064-3p

• Accession: MIMAT0014835
• Sequence: 44 - ugccacacugcaacaccuuaca - 65
• Deep sequencing: 72 reads, 30 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000012EAC7_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3064-3p
  • miRDB:mmu-miR-3064-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).