Stem-loop sequence api-mir-3053

Accession

MI0014015 (change log)

Description

Acyrthosiphon pisum miR-3053 stem-loop

Stem-loop

   --a    a        -     c  gug  gu 
5'    ggua cuuauuca cugug ga   uu  g
      |||| |||||||| ||||| ||   ||   
3'    ccau gaauaagu ggcac cu   ag  u
   aua    g        u     c  aaa  uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Acyr_2.0; GCA_000142985.2): GL350117.1: 223099-223161 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from api-mir-3053

• api-mir-3032: GL350117.1: 224322-224383 [-]
• api-mir-3024: GL350117.1: 223576-223639 [-]
• api-mir-3016: GL350117.1: 223456-223518 [-]
• api-mir-3053: GL350117.1: 223099-223161 [-]

Database links

• EntrezGene:Mir3053
• miRBase Tracker:MI0014015

Mature sequence api-miR-3053

• Accession: MIMAT0014795
• Sequence: 41 - ccacgguugaauaagguaccaua - 63
• Evidence: experimental; Illumina [1]

References

1. PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).