miRBase entry: api-mir-3049

Stem-loop api-mir-3049


Accession
MI0014007
Description
Acyrthosiphon pisum api-mir-3049 precursor miRNA

Literature search
1 open access papers mention api-mir-3049
(2 sentences)

Sequence

UCGGGAAGGCAGCUGCGGCGGACUgugcagguucgugcccaacauuccaguccguccaacuccuuuccguuu
.((((((((.((.((.(((((((((((..(((....)))...))...))))))))))).))))))))))...

Structure
--U        C  C  C         ---  -ca   u 
   CGGGAAGG AG UG GGCGGACUg   ug   ggu c
   |||||||| || || |||||||||   ||   |||  
   gccuuucc uc ac cugccugac   ac   ccg g
uuu        -  a  -         cuu  aac   u 


Annotation confidence Not enough data
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Genome context
GL349641.1: 802520-802591 [+]

Database links

Mature api-miR-3049

Accession MIMAT0014789
Description Acyrthosiphon pisum api-miR-3049 mature miRNA
Sequence 1 - UCGGGAAGGCAGCUGCGGCGGACU - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281