Stem-loop api-mir-3047-2

Accession

MI0014004

Description

Acyrthosiphon pisum api-mir-3047-2 precursor miRNA

Gene family

MIPF0001196; mir-3047

Sequence

ggggaguuuugaauguuguuguauaauauuuaaacaauuCAAAACAUUCAAAACUCCCUAC
((((((((((((((((((((((.(((...))).)))))....)))))))))))))))))..

Structure

--                 ----     a   u 
  ggggaguuuugaauguu    guugu uaa  
  |||||||||||||||||    ||||| ||| a
  UCCCUCAAAACUUACAA    uaaca auu  
CA                 AACu     a   u 

Annotation confidence Not enough data

Genome context

GL350343.1: 73002-73062 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from api-mir-3047-2

Mature api-miR-3047

• Accession: MIMAT0014786
• Description: Acyrthosiphon pisum api-miR-3047 mature miRNA
• Sequence: 40 - CAAAACAUUCAAAACUCCCUAC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281