Stem-loop sequence api-mir-3047-1

AccessionMI0014003 (change log)
DescriptionAcyrthosiphon pisum miR-3047-1 stem-loop
Gene family MIPF0001196; mir-3047
   --                 g     aaauau 
5'   agggaguuuugaauguu uugua      u
     ||||||||||||||||| |||||       
3'   ucccucaaaacuuacaa aacau      u
   ca                 -     aacaaa 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Acyr_2.0; GCA_000142985.2) Overlapping transcripts
GL350343.1: 72020-72080 [+]
Clustered miRNAs
< 10kb from api-mir-3047-1
api-mir-3037GL350343.1: 71782-71844 [+]
api-mir-3047-1GL350343.1: 72020-72080 [+]
api-mir-3031GL350343.1: 72875-72933 [+]
api-mir-3047-2GL350343.1: 73002-73062 [+]
Database links

Mature sequence api-miR-3047

Accession MIMAT0014786

40 - 


 - 61

Get sequence
Evidence experimental; Illumina [1]


PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).