Stem-loop sequence api-mir-3047-1

Accession

MI0014003 (change log)

Description

Acyrthosiphon pisum miR-3047-1 stem-loop

Gene family

MIPF0001196; mir-3047

Stem-loop

   --                 g     aaauau 
5'   agggaguuuugaauguu uugua      u
     ||||||||||||||||| |||||       
3'   ucccucaaaacuuacaa aacau      u
   ca                 -     aacaaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Acyr_2.0; GCA_000142985.2): GL350343.1: 72020-72080 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from api-mir-3047-1

• api-mir-3037: GL350343.1: 71782-71844 [+]
• api-mir-3047-1: GL350343.1: 72020-72080 [+]
• api-mir-3031: GL350343.1: 72875-72933 [+]
• api-mir-3047-2: GL350343.1: 73002-73062 [+]

Database links

• EntrezGene:Mir3047-1
• miRBase Tracker:MI0014003

Mature sequence api-miR-3047

• Accession: MIMAT0014786
• Sequence: 40 - caaaacauucaaaacucccuac - 61
• Evidence: experimental; Illumina [1]

References

1. PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).