miRBase entry: api-mir-3043-1

Stem-loop api-mir-3043-1


Accession
MI0013994
Description
Acyrthosiphon pisum api-mir-3043-1 precursor miRNA
Gene family
MIPF0001110; mir-3043


Sequence

ucaguauguguccuuuuaugugcugugcuauauuaucaaaaCACAUUAAGGACUCAUAUUGGAG
((((((((.((((((..(((((...((.((...)).))...))))).)))))).))))))))..

Structure
--        u      uu     cug  c  u 
  ucaguaug guccuu  augug   ug ua  
  |||||||| ||||||  |||||   || || a
  GGUUAUAC CAGGAA  UACAC   ac au  
GA        U      -U     aaa  u  u 


Annotation confidence Not enough data
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Genome context
GL349650.1: 609772-609835 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from api-mir-3043-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-3043

Accession MIMAT0014781
Description Acyrthosiphon pisum api-miR-3043 mature miRNA
Sequence 42 - CACAUUAAGGACUCAUAUUGGAG - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281