miRBase entry: api-mir-3032

Stem-loop api-mir-3032


Accession
MI0013975
Description
Acyrthosiphon pisum api-mir-3032 precursor miRNA


Sequence

UGUUAGUAUAACUCUUAGUAACAgugaauuuuaaaauugugacuagaguuuauacuaccgau
((.((((((((((((.(((.(((((..........))))).))))))).)))))))).))..

Structure
--  U        -    U   A     gaau 
  UG UAGUAUAA CUCU AGU ACAgu    u
  || |||||||| |||| ||| |||||     
  gc aucauauu gaga uca uguua    u
ua  c        u    -   g     aaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL350117.1: 224322-224383 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from api-mir-3032
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-3032

Accession MIMAT0014768
Description Acyrthosiphon pisum api-miR-3032 mature miRNA
Sequence 1 - UGUUAGUAUAACUCUUAGUAACA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281