Stem-loop sequence api-mir-3032

Accession

MI0013975 (change log)

Description

Acyrthosiphon pisum miR-3032 stem-loop

Stem-loop

   --u u        -    u   a     gaau 
5'    g uaguauaa cucu agu acagu    u
      | |||||||| |||| ||| |||||     
3'    c aucauauu gaga uca uguua    u
   uag c        u    -   g     aaau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Acyr_2.0; GCA_000142985.2): GL350117.1: 224322-224383 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from api-mir-3032

• api-mir-3032: GL350117.1: 224322-224383 [-]
• api-mir-3024: GL350117.1: 223576-223639 [-]
• api-mir-3016: GL350117.1: 223456-223518 [-]
• api-mir-3053: GL350117.1: 223099-223161 [-]

Database links

• EntrezGene:Mir3032
• miRBase Tracker:MI0013975

Mature sequence api-miR-3032

• Accession: MIMAT0014768
• Sequence: 1 - uguuaguauaacucuuaguaaca - 23
• Evidence: experimental; Illumina [1]

References

1. PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).