Stem-loop sequence api-mir-3031

Accession

MI0013974 (change log)

Description

Acyrthosiphon pisum miR-3031 stem-loop

Stem-loop

   -  -                   --       
5'  gg gaaauuuguuaagaagcaa  aguguu 
    || |||||||||||||||||||  ||||| a
3'  uc cuuugaacaauuuuucguu  uuauaa 
   a  a                   cc       

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Acyr_2.0; GCA_000142985.2): GL350343.1: 72875-72933 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from api-mir-3031

• api-mir-3037: GL350343.1: 71782-71844 [+]
• api-mir-3047-1: GL350343.1: 72020-72080 [+]
• api-mir-3031: GL350343.1: 72875-72933 [+]
• api-mir-3047-2: GL350343.1: 73002-73062 [+]

Database links

• EntrezGene:Mir3031
• miRBase Tracker:MI0013974

Mature sequence api-miR-3031

• Accession: MIMAT0014767
• Sequence: 37 - uugcuuuuuaacaaguuucacua - 59
• Evidence: experimental; Illumina [1]

References

1. PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).