Stem-loop sequence api-mir-3024

Accession

MI0013967 (change log)

Description

Acyrthosiphon pisum miR-3024 stem-loop

Stem-loop

   uc    gg      uag   c   ---    a 
5'   uuug  auuuaa   agc ggu   ugaa u
     ||||  ||||||   ||| |||   |||| u
3'   aaac  uaaauu   ucg cca   gcuu g
   ua    uu      cua   a   uau    u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Acyr_2.0; GCA_000142985.2): GL350117.1: 223576-223639 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from api-mir-3024

• api-mir-3032: GL350117.1: 224322-224383 [-]
• api-mir-3024: GL350117.1: 223576-223639 [-]
• api-mir-3016: GL350117.1: 223456-223518 [-]
• api-mir-3053: GL350117.1: 223099-223161 [-]

Database links

• EntrezGene:Mir3024
• miRBase Tracker:MI0013967

Mature sequence api-miR-3024

• Accession: MIMAT0014760
• Sequence: 1 - ucuuugggauuuaauagagccggu - 24
• Evidence: experimental; Illumina [1]

References

1. PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).