Stem-loop api-mir-92b-1

Accession

MI0013946

Description

Acyrthosiphon pisum api-mir-92b-1 precursor miRNA

Gene family

MIPF0001099; mir-92_2

Literature search

1 open access papers mention api-mir-92b-1
(1 sentences)

Sequence

agguuguguuguuugcaauauguauuguacauuaccgugugcgguccguacacgaucucaUAUUGCACUUGACCCAGCCUGC
((((((.((((..(((((((((.............((((((((...))))))))....)))))))))..)))).))))))..

Structure

--      u    uu         uauuguacauuac        g 
  agguug guug  ugcaauaug             cgugugcg  
  |||||| ||||  |||||||||             |||||||| u
  UCCGAC CAGU  ACGUUAUac             gcacaugc  
CG      C    UC         ---------ucua        c 

Annotation confidence Not enough data

Genome context

GL350511.1: 42426-42507 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-92b-1

Mature api-miR-92b

• Accession: MIMAT0014743
• Description: Acyrthosiphon pisum api-miR-92b mature miRNA
• Sequence: 61 - UAUUGCACUUGACCCAGCCUGC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281