miRBase entry: api-mir-29

Stem-loop api-mir-29


Accession
MI0013926
Description
Acyrthosiphon pisum api-mir-29 precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
1 open access papers mention api-mir-29
(1 sentences)

Sequence

ugguuucguauuggugcauagaaguauuaauuuuguaacuugucUAGCACCAUUUGAAACCAGU
((((((((...((((((.(((((((............)))..))))))))))..))))))))..

Structure
--        uau      a    --   auuaa 
  ugguuucg   uggugc uaga  agu     u
  ||||||||   |||||| ||||  |||      
  ACCAAAGU   ACCACG AUcu  uca     u
UG        -UU      -    gu   auguu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL350634.1: 49544-49607 [+]

Database links

Mature api-miR-29

Accession MIMAT0014726
Description Acyrthosiphon pisum api-miR-29 mature miRNA
Sequence 45 - UAGCACCAUUUGAAACCAGU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281