Stem-loop sequence api-mir-277

AccessionMI0013922 (change log)
DescriptionAcyrthosiphon pisum miR-277 stem-loop
Gene family MIPF0000156; mir-277
Literature search

2 open access papers mention api-mir-277
(7 sentences)

Stem-loop 
   --c         -     u    a     ---acac     u 
5'    cguaccaga agugu uuug caugg       acggu u
      ||||||||| ||||| |||| |||||       |||||  
3'    gcauggucu ucacg aaau guacu       ugccg u
   aca         a     u    -     aaacccu     c
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Acyr_2.0; GCA_000142985.2) Overlapping transcripts
GL349754.1: 855885-855963 [+]
intergenic
Clustered miRNAs
< 10kb from api-mir-277
api-mir-317GL349754.1: 848266-848342 [+]
api-mir-277GL349754.1: 855885-855963 [+]
api-mir-34GL349754.1: 863528-863595 [+]
Database links

Mature sequence api-miR-277

Accession MIMAT0014722
Sequence

57 -  

uaaaugcacuaucugguacgaca

 - 79

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).