miRBase entry: api-mir-1000

Stem-loop api-mir-1000


Accession
MI0013910
Description
Acyrthosiphon pisum api-mir-1000 precursor miRNA
Gene family
MIPF0000701; mir-1000


Sequence

AUAUUGUCCUGUCACAGCAGUAaugucacguaucugaaucguacugcugucgcgggacauuuucg
....((((((((.(((((((((...(((......)))....))))))))).))))))))......

Structure
--AUAU        C         -aug   cg 
      UGUCCUGU ACAGCAGUA    uca  u
      |||||||| |||||||||    |||   
      acagggcg ugucgucau    agu  a
gcuuuu        c         gcua   cu 


Annotation confidence Not enough data
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Genome context
GL349899.1: 512678-512742 [+]

Database links

Mature api-miR-1000

Accession MIMAT0014711
Description Acyrthosiphon pisum api-miR-1000 mature miRNA
Sequence 1 - AUAUUGUCCUGUCACAGCAGUA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281