Stem-loop sequence api-mir-1

Accession

MI0013909 (change log)

Description

Acyrthosiphon pisum miR-1 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

2 open access papers mention api-mir-1
(12 sentences)

Stem-loop

   --           g       g    -  -   ---cg  a   a 
5'   ccguacuucuu uauguuc caua gu gug     cg gcc u
     ||||||||||| ||||||| |||| || |||     || |||  
3'   gguaugaagaa auguaag guau ca cau     gc cgg u
   ga           -       -    g  g   uuuaa  -   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Acyr_2.0; GCA_000142985.2): GL350503.1: 79303-79384 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir1
• miRBase Tracker:MI0013909

Mature sequence api-miR-1

• Accession: MIMAT0014710
• Sequence: 61 - uggaauguaaagaaguauggag - 82
• Evidence: experimental; Illumina [1]

References

1. PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).