Stem-loop sequence bmo-mir-2999

Accession

MI0013855 (change log)

Description

Bombyx mori miR-2999 stem-loop

Literature search

1 open access papers mention bmo-mir-2999
(1 sentences)

Stem-loop

    g      -  -----    c   --g        --------------     -uu   cu   g 
5' c cccgcg cg     gcug gac   gacuagac              gcgca   uuc  cgg c
   | |||||| ||     |||| |||   ||||||||              |||||   |||  |||  
3' g gggugu gc     ugau uug   uugauuug              cgcgu   aag  guc u
    g      u  auuau    u   uua        uuuauugacuuuga     ucc   uu   g 

Deep sequencing

385 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004581688.1: 951610-951720 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013855

Mature sequence bmo-miR-2999

• Accession: MIMAT0014660
• Sequence: 12 - cugcgacggacuagacgcgca - 32
• Deep sequencing: 369 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000015F262_7091

References

1. PMID:20089182 "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development" Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R BMC Genomics. 11:52(2010).