miRBase entry: tgu-mir-199-2

Stem-loop tgu-mir-199-2


Accession
MI0013847
Description
Taeniopygia guttata tgu-mir-199-2 precursor miRNA
Gene family
MIPF0000040; mir-199


Sequence

gcguccggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUcaggacaaugcuguuguACAGUAGUCUGCACAUUGGUUagacugggcaagggaaagcggcggcguggacuauuggggacgc
((((((..((.(((.((.(((((((.((..(((((((.((((((((.(((.((..((((((...))))))))))).)))..)).))).)))))))..))...))))))).))))))).....))))))

Structure
      ---gg  a   u  u       --C  AG       A   -  --   U   g  aa      u 
gcgucc     ag ucc gc ccgucgc   CC  UGUUCAG CUA CC  UGU cag ac  ugcugu  
||||||     || ||| || |||||||   ||  ||||||| ||| ||  ||| ||| ||  |||||| g
cgcagg     uc agg ug ggcggcg   gg  acggguc gaU GG  ACA GUC UG  AUGACA  
      gguua  -   -  c       aaa  ga       a   U  UU   C   -  --      u 


Annotation confidence Not enough data
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Genome context
chr8_random: 1629749-1629876 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-199-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-199-5p

Accession MIMAT0014645
Description Taeniopygia guttata tgu-miR-199-5p mature miRNA
Sequence 26 - CCCAGUGUUCAGACUACCUGUU - 47
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-199-3p

Accession MIMAT0014617
Description Taeniopygia guttata tgu-miR-199-3p mature miRNA
Sequence 65 - ACAGUAGUCUGCACAUUGGUU - 85
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727