miRBase entry: tgu-mir-146c

Stem-loop tgu-mir-146c


Accession
MI0013839
Description
Taeniopygia guttata tgu-mir-146c precursor miRNA
Gene family
MIPF0000103; mir-146


Sequence

uucucagcuuUGAGAACUGAAUUCCAUGGGUUguaauugaaucugcugucagacccauggggcucaguucuu
...........(((((((((.(((((((((((.....(((........)))))))))))))).)))))))))

Structure
uucucagcuuU         A           guaau   auc 
           GAGAACUGA UUCCAUGGGUU     uga   u
           ||||||||| |||||||||||     |||    
           uucuugacu gggguacccag     acu   g
-----------         c           -----   guc 


Annotation confidence Not enough data
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Genome context
chr13: 11635088-11635159 [+]

Database links

Mature tgu-miR-146c

Accession MIMAT0014609
Description Taeniopygia guttata tgu-miR-146c mature miRNA
Sequence 11 - UGAGAACUGAAUUCCAUGGGUU - 32
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727