miRBase entry: tgu-mir-18b

Stem-loop tgu-mir-18b


Accession
MI0013837
Description
Taeniopygia guttata tgu-mir-18b precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

acuucuggcauuacuguggcgauuccguggugguggcagggcacggacaaaaccaggauuguugugcugccuuaggccacgcugcaaaagguccuuguguUAAGGUGCAUCUAGUGCAGUUAgugauguagc
.......(((((((((.((.....))(((((...(((((.(((...((((........))))))).)))))....)))))((((((..(((((((((...)))))...))))..)))))))))))))))...

Structure
acuucug         uggcgauuccguggugguggcagggcacggacaaaaccaggauuguugugcugccuuaggccac      aa    ---     u 
       gcauuacug                                                                gcugca  aggu   ccuug  
       |||||||||                                                                ||||||  ||||   ||||| g
       uguagugAU                                                                UGACGU  UCUA   GGAAU  
----cga         ----------------------------------------------------------------      GA    CGU     u 


Annotation confidence Not enough data
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Genome context
chr4A: 7273805-7273936 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from tgu-mir-18b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-18b

Accession MIMAT0014607
Description Taeniopygia guttata tgu-miR-18b mature miRNA
Sequence 101 - UAAGGUGCAUCUAGUGCAGUUA - 122
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727