miRBase entry: tgu-mir-214

Stem-loop tgu-mir-214


Accession
MI0013833
Description
Taeniopygia guttata tgu-mir-214 precursor miRNA
Gene family
MIPF0000062; mir-214

Literature search
1 open access papers mention tgu-mir-214
(1 sentences)

Sequence

gacggaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccucucaccuguACAGCAGGCACAGACAGGCAGUcgcaugacaa
.......((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))

Structure
gacggag          u          ACA            aacau 
       uugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
       |||||||||| ||||||||||   ||||||||||||     c
       aacaguacgc GACGGACAGA   GGACGACAuguc     u
-------          U          CAC            cacuc 


Annotation confidence Not enough data
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Genome context
chr8_random: 1635714-1635805 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-214
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-214-3p

Accession MIMAT0014603
Description Taeniopygia guttata tgu-miR-214-3p mature miRNA
Sequence 61 - ACAGCAGGCACAGACAGGCAGU - 82
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-214-5p

Accession MIMAT0027021
Description Taeniopygia guttata tgu-miR-214-5p mature miRNA
Sequence 20 - UGCCUGUCUACACUUGCUGUGC - 41
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727