Stem-loop sequence tgu-mir-214

AccessionMI0013833 (change log)
DescriptionTaeniopygia guttata miR-214 stem-loop
Gene family MIPF0000062; mir-214
Literature search

1 open access papers mention tgu-mir-214
(1 sentences)

Stem-loop 
   gacggag          u          aca            aacau 
5'        uugucaugug cugccugucu   cuugcugugcag     c
          |||||||||| ||||||||||   ||||||||||||     c
3'        aacaguacgc gacggacaga   ggacgacauguc     u
   -------          u          cac            cacuc
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr8_random: 1635714-1635805 [+]
sense
ENSTGUT00000018760 ; tgu-mir-214-201; exon 1
antisense
Clustered miRNAs
< 10kb from tgu-mir-214
tgu-mir-199-2chr8_random: 1629749-1629876 [+]
tgu-mir-214chr8_random: 1635714-1635805 [+]
Database links

Mature sequence tgu-miR-214-5p

Accession MIMAT0027021
Sequence

20 -  

ugccugucuacacuugcugugc

 - 41

Get sequence
Evidence experimental; Illumina [2]

Mature sequence tgu-miR-214-3p

Accession MIMAT0014603
Sequence

61 -  

acagcaggcacagacaggcagu

 - 82

Get sequence
Evidence experimental; 454 [1], Illumina [2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).