miRBase entry: tgu-mir-1388

Stem-loop tgu-mir-1388


Accession
MI0013822
Description
Taeniopygia guttata tgu-mir-1388 precursor miRNA
Gene family
MIPF0000805; mir-1388


Sequence

gccccagugaggggcaccucgAGGACUGUCUAACCUGAGAAUGgugaaacaucaaggucaAUCUCAGGUUCGUCAGCCCAUGagaugccuuc
(((((.....)))))..((((.((.(((.(.(((((((((.((((((....)))...))).))))))))).).))).)).))))........

Structure
gccccagugaggggcac    A  A   U U         A   ---   a 
                 cucg GG CUG C AACCUGAGA UGg   uga a
                 |||| || ||| | ||||||||| |||   |||  
                 gaGU CC GAC G UUGGACUCU acu   acu c
---------cuuccgua    A  C   U C         A   gga   a 


Annotation confidence Not enough data
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Genome context
chr20: 8822103-8822194 [-]

Database links

Mature tgu-miR-1388-3p

Accession MIMAT0014594
Description Taeniopygia guttata tgu-miR-1388-3p mature miRNA
Sequence 61 - AUCUCAGGUUCGUCAGCCCAUG - 82
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-1388-5p

Accession MIMAT0027019
Description Taeniopygia guttata tgu-miR-1388-5p mature miRNA
Sequence 22 - AGGACUGUCUAACCUGAGAAUG - 43
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727