miRBase entry: tgu-mir-193a

Stem-loop tgu-mir-193a


Accession
MI0013813
Description
Taeniopygia guttata tgu-mir-193a precursor miRNA
Gene family
MIPF0000082; mir-193


Sequence

aguCGGGGUUUUGGGGGCGAGAUGAgcuuauguuuuauccAACUGGCCCACAAAGUCCCGCUuuuggugguc
((.((((((((((.((((.((.(((((....))).....)).)).)))).))))))))))))..........

Structure
----------  u          G    G  A  -----   u 
          ag CGGGGUUUUG GGGC AG UG     Agc u
          || |||||||||| |||| || ||     |||  
          UC GCCCUGAAAC CCCG UC Ac     uug a
cuggugguuu  -          A    G  A  cuauu   u 


Annotation confidence Not enough data
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Genome context
chr14: 6793220-6793291 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-193a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-193a-3p

Accession MIMAT0014585
Description Taeniopygia guttata tgu-miR-193a-3p mature miRNA
Sequence 41 - AACUGGCCCACAAAGUCCCGCU - 62
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-193a-5p

Accession MIMAT0027014
Description Taeniopygia guttata tgu-miR-193a-5p mature miRNA
Sequence 4 - CGGGGUUUUGGGGGCGAGAUGA - 25
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727