miRBase entry: tgu-mir-16a

Stem-loop tgu-mir-16a


Accession
MI0013811
Description
Taeniopygia guttata tgu-mir-16a precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

ugucauacuuUAGCAGCACGUAAAUAUUGGUGuuaagacuguaaauaucuCCAGUAUUAACUGUGCUGCUGAaguaaggcuagccacuucug
.(((.((((((((((((((((.((((((((.(................).)))))))).)).)))))))))))))).)))............

Structure
-----------u   a              -  A        U uuaagac 
            guc uacuuUAGCAGCAC GU AAUAUUGG G       u
            ||| |||||||||||||| || |||||||| |        
            cgg augaAGUCGUCGUG CA UUAUGACC c       g
gucuucaccgau   a              U  A        u uauaaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 55910032-55910123 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-16a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-16a-5p

Accession MIMAT0014583
Description Taeniopygia guttata tgu-miR-16a-5p mature miRNA
Sequence 11 - UAGCAGCACGUAAAUAUUGGUG - 32
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-16a-3p

Accession MIMAT0014647
Description Taeniopygia guttata tgu-miR-16a-3p mature miRNA
Sequence 51 - CCAGUAUUAACUGUGCUGCUGA - 72
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727