miRBase entry: tgu-mir-217

Stem-loop tgu-mir-217


Accession
MI0013806
Description
Taeniopygia guttata tgu-mir-217 precursor miRNA
Gene family
MIPF0000077; mir-217


Sequence

augucgcagAUACUGCAUCAGGAACUGAUUGgauaauaaucacucaccAUCAGUUCCUAAUGCAUUGCCUuca
.....((((....(((((.((((((((((.((..............)))))))))))).))))))))).....

Structure
auguc    AUAC     C          U  auaaua 
     gcag    UGCAU AGGAACUGAU Gg      a
     ||||    ||||| |||||||||| ||       
     CGUU    ACGUA UCCUUGACUA cc      u
acuUC    ----     A          -  acucac 


Annotation confidence Not enough data
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Genome context
chr3: 28151737-28151809 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from tgu-mir-217
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-217-5p

Accession MIMAT0014579
Description Taeniopygia guttata tgu-miR-217-5p mature miRNA
Sequence 10 - AUACUGCAUCAGGAACUGAUUG - 31
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-217-3p

Accession MIMAT0027010
Description Taeniopygia guttata tgu-miR-217-3p mature miRNA
Sequence 49 - AUCAGUUCCUAAUGCAUUGCCU - 70
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727