Stem-loop sequence tgu-mir-92-2

Accession

MI0013801 (change log)

Description

Taeniopygia guttata miR-92-2 stem-loop

Gene family

MIPF0000013; mir-25

Literature search

3 open access papers mention tgu-mir-92-2
(9 sentences)

Stem-loop

   ccuugcacuga             g     uu  u   u     gua  u 
5'            uuucuccaugggu gggau  gu gca uacuu   gc g
              ||||||||||||| |||||  || ||| |||||   || u
3'            aaggagguguccg cccug  ca cgu augag   ug a
   --------gga             g     uu  -   u     --a  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (taeGlu3.2.4): chr4A: 7274404-7274495 [+]
• Overlapping transcripts:

  sense

  ENSTGUT00000018779 ; tgu-mir-92-2-201; exon 1

Clustered miRNAs

< 10kb from tgu-mir-92-2

• tgu-mir-106: chr4A: 7273746-7273818 [+]
• tgu-mir-18b: chr4A: 7273805-7273936 [+]
• tgu-mir-20b: chr4A: 7274092-7274164 [+]
• tgu-mir-19b-2: chr4A: 7274224-7274296 [+]
• tgu-mir-92-2: chr4A: 7274404-7274495 [+]
• tgu-mir-363: chr4A: 7274550-7274638 [+]

Database links

• miRBase Tracker:MI0013801

Mature sequence tgu-miR-92-2-5p

• Accession: MIMAT0031032
• Sequence: 23 - guggggauuuguugcauuacuu - 44
• Evidence: experimental; Illumina [2]

Mature sequence tgu-miR-92-3p

• Accession: MIMAT0014574
• Sequence: 61 - uauugcacuugucccggccugu - 82
• Evidence: experimental; 454 [1], Illumina [1-2]

References

1. PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2. PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).