miRBase entry: tgu-mir-130a

Stem-loop tgu-mir-130a


Accession
MI0013799
Description
Taeniopygia guttata tgu-mir-130a precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

agaGCCCUUUUUCUGUUGUACUACuggcaauuaugaugagCAGUGCAAUAUUAAAAGGGCAUuggcuggcag
...((((((((..(((((((((.((.(((....)).).)).)))))))))..))))))))............

Structure
---------aga        UC         A  g -  a 
            GCCCUUUU  UGUUGUACU Cu g ca u
            ||||||||  ||||||||| || | ||  
            CGGGAAAA  AUAACGUGA ga u gu u
gacggucgguUA        UU         C  g a  a 


Annotation confidence Not enough data
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Genome context
chr15: 8478910-8478981 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from tgu-mir-130a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-130a-3p

Accession MIMAT0014573
Description Taeniopygia guttata tgu-miR-130a-3p mature miRNA
Sequence 41 - CAGUGCAAUAUUAAAAGGGCAU - 62
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-130a-5p

Accession MIMAT0027006
Description Taeniopygia guttata tgu-miR-130a-5p mature miRNA
Sequence 4 - GCCCUUUUUCUGUUGUACUAC - 24
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727