Stem-loop sequence tgu-mir-219a

AccessionMI0013789 (change log)
DescriptionTaeniopygia guttata miR-219a stem-loop
Gene family MIPF0000044; mir-219
Literature search

1 open access papers mention tgu-mir-219a
(1 sentences)

Stem-loop 
   ucuccgcuccugau      a            -ug  -   g 
5'               ugucca acgcaauucuug   cg aug a
                 |||||| ||||||||||||   || |||  
3'               acaggu uguguuaagaac   gc ugc g
   --------------      c            caa  a   c
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr17: 5454954-5455025 [+]
sense
ENSTGUT00000018761 ; tgu-mir-219a-201; exon 1
ENSTGUT00000003692 ; ST6GALNAC4-201; intron 3
Clustered miRNAs
< 10kb from tgu-mir-219a
tgu-mir-219bchr17: 5454921-5455078 [-]
tgu-mir-219achr17: 5454954-5455025 [+]
Database links

Mature sequence tgu-miR-219a

Accession MIMAT0014568
Sequence

11 -  

ugauuguccaaacgcaauucuu

 - 32

Get sequence
Evidence experimental; 454 [1], Illumina [1]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).