miRBase entry: tgu-mir-187

Stem-loop tgu-mir-187


Accession
MI0013788
Description
Taeniopygia guttata tgu-mir-187 precursor miRNA
Gene family
MIPF0000078; mir-187


Sequence

cuccgGCUACAACACAGGACAUGGGAGcuuuucugaacccUCGUGUCUUGUGUUGCAGCCagaggggcac
(((.((((.((((((((((((((((.(.((....)).).)))))))))))))))).)))).)))......

Structure
------   c    A                A c  u 
      cuc gGCU CAACACAGGACAUGGG G uu u
      ||| |||| |||||||||||||||| | ||  
      gag CCGA GUUGUGUUCUGUGCUc c ag c
cacggg   a    C                c a  u 


Annotation confidence Not enough data
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Genome context
chr2_random: 838730-838799 [+]

Database links

Mature tgu-miR-187-3p

Accession MIMAT0014567
Description Taeniopygia guttata tgu-miR-187-3p mature miRNA
Sequence 41 - UCGUGUCUUGUGUUGCAGCC - 60
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-187-5p

Accession MIMAT0027004
Description Taeniopygia guttata tgu-miR-187-5p mature miRNA
Sequence 6 - GCUACAACACAGGACAUGGGAG - 27
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727