miRBase entry: tgu-mir-194-2

Stem-loop tgu-mir-194-2


Accession
MI0013776
Description
Taeniopygia guttata tgu-mir-194-2 precursor miRNA
Gene family
MIPF0000055; mir-194


Sequence

ugcucucauaUGUAACAGCAACUCCAUGUGGAcuacacugacuuCCAGUGGAGAUGCUGUUACUUUugaugg
..((.(((...(((((((((.((((((.((((...........)))))))))).)))))))))...))).))

Structure
ug  c   uaU         A      G    cuac 
  cu uca   GUAACAGCA CUCCAU UGGA    a
  || |||   ||||||||| |||||| ||||    c
  gg agu   CAUUGUCGU GAGGUG ACCu    u
--  u   UUU         A      -    ucag 


Annotation confidence Not enough data
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Genome context
chrUn: 94526975-94527046 [+]

Database links

Mature tgu-miR-194-5p

Accession MIMAT0014558
Description Taeniopygia guttata tgu-miR-194-5p mature miRNA
Sequence 11 - UGUAACAGCAACUCCAUGUGGA - 32
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-194-3p

Accession MIMAT0027001
Description Taeniopygia guttata tgu-miR-194-3p mature miRNA
Sequence 45 - CCAGUGGAGAUGCUGUUACUUU - 66
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727