miRBase entry: tgu-let-7d

Stem-loop tgu-let-7d


Accession
MI0013750
Description
Taeniopygia guttata tgu-let-7d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention tgu-let-7d
(1 sentences)

Sequence

gcuccuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcucagaaggagguaaCUAUACAACCUGCUGCCUUUCUuagggc
((.(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))))

Structure
  u       A              C      -------uua      g 
gc ccuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
|| ||||||| |||||||||||||| ||||||          |||||| a
cg ggauUCU UUCCGUCGUCCAAC UAUCaa          cucguu u
  -       -              A      uggaggaaga      u 


Annotation confidence Not enough data
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Genome context
chr12: 773412-773503 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from tgu-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-let-7d-5p

Accession MIMAT0014536
Description Taeniopygia guttata tgu-let-7d-5p mature miRNA
Sequence 11 - AGAGGUAGUAGGUUGCAUAGUU - 32
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-let-7d-3p

Accession MIMAT0026992
Description Taeniopygia guttata tgu-let-7d-3p mature miRNA
Sequence 65 - CUAUACAACCUGCUGCCUUUCU - 86
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727