miRBase entry: tgu-mir-30a

Stem-loop tgu-mir-30a


Accession
MI0013749
Description
Taeniopygia guttata tgu-mir-30a precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

uuggggcagucagugccucUGUAAACAUCCUUGACUGGAAGCUggaagggcuggaaggagCUUUCAGUCGGAUGUUUACAGCagcaggcugc
.....((((((..(((..((((((((((((..(((((((((((...............)))))))))))))))))))))))..)))))))))

Structure
uuggg      ag   cu            UU           ggaagg 
     gcaguc  ugc  cUGUAAACAUCC  GACUGGAAGCU      g
     ||||||  |||  ||||||||||||  |||||||||||      c
     cgucgg  acg  GACAUUUGUAGG  CUGACUUUCga      u
-----      --   aC            --           ggaagg 


Annotation confidence Not enough data
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Genome context
chr23_random: 192848-192939 [+]

Database links

Mature tgu-miR-30a-5p

Accession MIMAT0014637
Description Taeniopygia guttata tgu-miR-30a-5p mature miRNA
Sequence 20 - UGUAAACAUCCUUGACUGGAAGCU - 43
Evidence experimental
454 [1], Illumina [2]

Mature tgu-miR-30a-3p

Accession MIMAT0014535
Description Taeniopygia guttata tgu-miR-30a-3p mature miRNA
Sequence 61 - CUUUCAGUCGGAUGUUUACAGC - 82
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727