miRBase entry: tgu-mir-221

Stem-loop tgu-mir-221


Accession
MI0013710
Description
Taeniopygia guttata tgu-mir-221 precursor miRNA
Gene family
MIPF0000051; mir-221


Sequence

ACCUGGCAUACAAUGUAGAUUUCUGUguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUCcagcugccug
((((((((.(((((((((....((((((((...)))).))))))))))))).)))))))).............

Structure
-------------        U         AUUU    -    g 
             ACCUGGCA ACAAUGUAG    CUGU guuu  
             |||||||| |||||||||    |||| |||| u
             UGGGUCGU UGUUACAUC    GAca cgaa  
guccgucgacCUU        C         ----    a    u 


Annotation confidence Not enough data
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Genome context
chr1: 5261236-5261308 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-221-3p

Accession MIMAT0014512
Description Taeniopygia guttata tgu-miR-221-3p mature miRNA
Sequence 41 - AGCUACAUUGUCUGCUGGGUUUC - 63
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-221-5p

Accession MIMAT0026976
Description Taeniopygia guttata tgu-miR-221-5p mature miRNA
Sequence 1 - ACCUGGCAUACAAUGUAGAUUUCUGU - 26
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727