miRBase entry: tgu-mir-30b

Stem-loop tgu-mir-30b


Accession
MI0013697
Description
Taeniopygia guttata tgu-mir-30b precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

agugagcgacUGUAAACAUCCUCGACUGGAAGCugugaagcagcagauggggCUUUCAGUCGGAUGUUUGCAG
.........((((((((((((..(((((((((((.(............).)))))))))))))))))))))))

Structure
agugagcga            UC           g gaagc 
         cUGUAAACAUCC  GACUGGAAGCu u     a
         ||||||||||||  ||||||||||| |      
         GACGUUUGUAGG  CUGACUUUCgg g     g
---------            --           g uagac 


Annotation confidence Not enough data
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Genome context
chr3: 84719838-84719910 [+]

Database links

Mature tgu-miR-30b-5p

Accession MIMAT0014506
Description Taeniopygia guttata tgu-miR-30b-5p mature miRNA
Sequence 11 - UGUAAACAUCCUCGACUGGAAGC - 33
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-30b-3p

Accession MIMAT0014629
Description Taeniopygia guttata tgu-miR-30b-3p mature miRNA
Sequence 53 - CUUUCAGUCGGAUGUUUGCAG - 73
Evidence experimental
454 [1], Illumina [1]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727