miRBase entry: tgu-mir-2988

Stem-loop tgu-mir-2988

Accession

MI0013687

Description

Taeniopygia guttata tgu-mir-2988 precursor miRNA

Sequence

cCCUCUUCUCUGGAGCCAGGCUGGgagagcugggaauguucaccuggagaggaaaaugcuccagggagagcucagagccuagaggggauccaggagagcuggagaggg
((((((((((((((.((...(((((....(((((....(((.(((((((.........))))))))))..)))))..)))))...)).))))))......))))))))

Structure

        ------      G  AGG     agag     aaug   a       agg 
cCCUCUUC      UCUGGA CC   CUGGg    cuggg    uuc ccuggag   a
||||||||      |||||| ||   |||||    |||||    ||| |||||||   a
gggagagg      ggaccu gg   gaucc    gacuc    gag ggaccuc   a
        ucgaga      a  gga     --ga     --ga   -       gua

Annotation confidence Not enough data

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Genome context

chr2: 2951825-2951932 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-2988

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tgu-miR-2988

Accession	MIMAT0014498
Description	Taeniopygia guttata tgu-miR-2988 mature miRNA
Sequence	2 - CCUCUUCUCUGGAGCCAGGCUGG - 24
Evidence	experimental Illumina [1]

References

PubMed ID: 20360741
The genome of a songbird
"Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
"Nature (2010) 464:757-762