miRBase entry: tgu-mir-2987

Stem-loop tgu-mir-2987


Accession
MI0013686
Description
Taeniopygia guttata tgu-mir-2987 precursor miRNA

Literature search
1 open access papers mention tgu-mir-2987
(2 sentences)

Sequence

uuaggccgaaagAGCAGCCAGAGCCUUCCCUCAaugucuguuuuacagAGAGCAAGGCUGAGGCUGUUCUcagagccuga
(((((((...(((((((((..((((((..(((....(((((...)))))))).))))))..)))))))))..).))))))

Structure
      - gaa         AG      CC   Aaug     u 
uuaggc c   agAGCAGCC  AGCCUU  CUC    ucugu  
|||||| |   |||||||||  ||||||  |||    ||||| u
aguccg g   UCUUGUCGG  UCGGAA  GAG    Agaca  
      a -ac         AG      -C   ----     u 


Annotation confidence Not enough data
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Genome context
chr12: 776733-776812 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from tgu-mir-2987
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-2987-3p

Accession MIMAT0014497
Description Taeniopygia guttata tgu-miR-2987-3p mature miRNA
Sequence 49 - AGAGCAAGGCUGAGGCUGUUCU - 70
Evidence experimental
Illumina [1-2]

Mature tgu-miR-2987-5p

Accession MIMAT0026971
Description Taeniopygia guttata tgu-miR-2987-5p mature miRNA
Sequence 13 - AGCAGCCAGAGCCUUCCCUCA - 33
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727