Stem-loop sequence tgu-mir-2987

AccessionMI0013686 (change log)
DescriptionTaeniopygia guttata miR-2987 stem-loop
Literature search

1 open access papers mention tgu-mir-2987
(2 sentences)

Stem-loop 
         - gaa         ag      cc   aaug    u 
5' uuaggc c   agagcagcc  agccuu  cuc    ucug u
   |||||| |   |||||||||  ||||||  |||    |||| u
3' aguccg g   ucuugucgg  ucggaa  gag    agac u
         a -ac         ag      -c   ----    a
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr12: 776733-776812 [+]
intergenic
Clustered miRNAs
< 10kb from tgu-mir-2987
tgu-let-7a-3chr12: 772013-772103 [+]
tgu-let-7fchr12: 772417-772508 [+]
tgu-let-7dchr12: 773412-773503 [+]
tgu-mir-2987chr12: 776733-776812 [+]
Database links

Mature sequence tgu-miR-2987-5p

Accession MIMAT0026971
Sequence

13 -  

agcagccagagccuucccuca

 - 33

Get sequence
Evidence experimental; Illumina [2]

Mature sequence tgu-miR-2987-3p

Accession MIMAT0014497
Sequence

49 -  

agagcaaggcugaggcuguucu

 - 70

Get sequence
Evidence experimental; Illumina [1-2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).