miRBase entry: tgu-mir-2984

Stem-loop tgu-mir-2984


Accession
MI0013682
Description
Taeniopygia guttata tgu-mir-2984 precursor miRNA

Literature search
1 open access papers mention tgu-mir-2984
(2 sentences)

Sequence

ugcuucaccugcggAGCCUGCUGAGAGUGAAAUUGauaaaggacagcaccagcccaggcAAUUUCACUCACAGCGGGCACUUgcaggugaagca
((((((((((((((.((((((((.(((((((((((.....((...((....))))...))))))))))).))))))))..))))))))))))))

Structure
              -A        A           auaaa  aca  a 
ugcuucaccugcgg  GCCUGCUG GAGUGAAAUUG     gg   gc c
||||||||||||||  |||||||| |||||||||||     ||   ||  
acgaaguggacgUU  CGGGCGAC CUCACUUUAAc     cc   cg c
              CA        A           --gga  ---  a 


Annotation confidence Not enough data
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Genome context
chr1: 39743243-39743336 [-]

Database links

Mature tgu-miR-2984-5p

Accession MIMAT0014494
Description Taeniopygia guttata tgu-miR-2984-5p mature miRNA
Sequence 15 - AGCCUGCUGAGAGUGAAAUUG - 35
Evidence experimental
Illumina [1-2]

Mature tgu-miR-2984-3p

Accession MIMAT0026970
Description Taeniopygia guttata tgu-miR-2984-3p mature miRNA
Sequence 60 - AAUUUCACUCACAGCGGGCACUU - 82
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727